NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
892.3 |
| Mean read quality |
8.9 |
| Median read length |
839.5 |
| Median read quality |
9.3 |
| Number of reads |
16.0 |
| Read length N50 |
966.0 |
| STDEV read length |
330.4 |
| Total bases |
14,277.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
16 (100.0%) 0.0Mb |
| >Q7 |
16 (100.0%) 0.0Mb |
| >Q10 |
5 (31.2%) 0.0Mb |
| >Q12 |
1 (6.2%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (536) |
| 2 |
11.4 (1485) |
| 3 |
10.7 (1585) |
| 4 |
10.6 (1355) |
| 5 |
10.6 (937) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1585 (10.7) |
| 2 |
1485 (11.4) |
| 3 |
1355 (10.6) |
| 4 |
1108 (8.8) |
| 5 |
989 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot