NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,706.3 |
| Mean read quality |
9.1 |
| Median read length |
973.0 |
| Median read quality |
9.7 |
| Number of reads |
521.0 |
| Read length N50 |
11,754.0 |
| STDEV read length |
6,724.8 |
| Total bases |
1,930,992.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
521 (100.0%) 1.9Mb |
| >Q7 |
521 (100.0%) 1.9Mb |
| >Q10 |
195 (37.4%) 0.7Mb |
| >Q12 |
4 (0.8%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.9 (780) |
| 2 |
12.9 (2522) |
| 3 |
12.7 (742) |
| 4 |
12.0 (2562) |
| 5 |
12.0 (564) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
73185 (8.8) |
| 2 |
43786 (9.3) |
| 3 |
38367 (8.9) |
| 4 |
36066 (10.8) |
| 5 |
34494 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot