NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
740.3 |
| Mean read quality |
7.7 |
| Median read length |
651.0 |
| Median read quality |
8.2 |
| Number of reads |
183.0 |
| Read length N50 |
714.0 |
| STDEV read length |
313.7 |
| Total bases |
135,480.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
183 (100.0%) 0.1Mb |
| >Q7 |
181 (98.9%) 0.1Mb |
| >Q10 |
6 (3.3%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.6 (769) |
| 2 |
10.6 (779) |
| 3 |
10.5 (626) |
| 4 |
10.3 (563) |
| 5 |
10.2 (506) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3167 (9.3) |
| 2 |
1955 (8.6) |
| 3 |
1800 (8.8) |
| 4 |
1765 (7.4) |
| 5 |
1727 (7.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot