NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,992.3 |
| Mean read quality |
8.8 |
| Median read length |
848.0 |
| Median read quality |
9.6 |
| Number of reads |
19.0 |
| Read length N50 |
6,620.0 |
| STDEV read length |
3,260.2 |
| Total bases |
37,853.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
19 (100.0%) 0.0Mb |
| >Q7 |
19 (100.0%) 0.0Mb |
| >Q10 |
5 (26.3%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.7 (616) |
| 2 |
10.8 (1353) |
| 3 |
10.4 (14596) |
| 4 |
10.3 (677) |
| 5 |
10.2 (1839) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14596 (10.4) |
| 2 |
6620 (8.6) |
| 3 |
2277 (8.7) |
| 4 |
1839 (10.2) |
| 5 |
1483 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot