NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,465.0 |
| Mean read quality |
8.4 |
| Median read length |
4,003.0 |
| Median read quality |
9.0 |
| Number of reads |
1,253.0 |
| Read length N50 |
14,519.0 |
| STDEV read length |
8,923.3 |
| Total bases |
9,353,667.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1253 (100.0%) 9.4Mb |
| >Q7 |
1253 (100.0%) 9.4Mb |
| >Q10 |
119 (9.5%) 0.6Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.9 (3598) |
| 2 |
11.4 (525) |
| 3 |
11.2 (3817) |
| 4 |
11.0 (24665) |
| 5 |
11.0 (581) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
75378 (8.6) |
| 2 |
64579 (8.0) |
| 3 |
57339 (8.8) |
| 4 |
52857 (7.7) |
| 5 |
51057 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot