NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,904.6 |
| Mean read quality |
9.0 |
| Median read length |
689.0 |
| Median read quality |
9.6 |
| Number of reads |
63.0 |
| Read length N50 |
5,372.0 |
| STDEV read length |
3,294.5 |
| Total bases |
119,990.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
63 (100.0%) 0.1Mb |
| >Q7 |
63 (100.0%) 0.1Mb |
| >Q10 |
23 (36.5%) 0.1Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.8 (607) |
| 2 |
11.1 (520) |
| 3 |
11.1 (511) |
| 4 |
10.9 (2841) |
| 5 |
10.9 (4442) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18569 (10.1) |
| 2 |
15114 (10.2) |
| 3 |
10725 (7.7) |
| 4 |
7348 (8.9) |
| 5 |
6227 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot