NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
989.7 |
| Mean read quality |
8.6 |
| Median read length |
674.0 |
| Median read quality |
9.3 |
| Number of reads |
1,509.0 |
| Read length N50 |
908.0 |
| STDEV read length |
1,533.3 |
| Total bases |
1,493,526.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1509 (100.0%) 1.5Mb |
| >Q7 |
1495 (99.1%) 1.5Mb |
| >Q10 |
433 (28.7%) 0.5Mb |
| >Q12 |
19 (1.3%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.6 (597) |
| 2 |
12.8 (568) |
| 3 |
12.8 (777) |
| 4 |
12.6 (789) |
| 5 |
12.4 (714) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27935 (10.9) |
| 2 |
23612 (10.0) |
| 3 |
19705 (9.6) |
| 4 |
18540 (10.0) |
| 5 |
13707 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot