NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,191.9 |
| Mean read quality |
9.3 |
| Median read length |
2,270.5 |
| Median read quality |
9.9 |
| Number of reads |
1,694.0 |
| Read length N50 |
4,829.0 |
| STDEV read length |
2,754.2 |
| Total bases |
5,407,055.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1694 (100.0%) 5.4Mb |
| >Q7 |
1694 (100.0%) 5.4Mb |
| >Q10 |
795 (46.9%) 2.5Mb |
| >Q12 |
7 (0.4%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (728) |
| 2 |
12.9 (1844) |
| 3 |
12.6 (3131) |
| 4 |
12.3 (634) |
| 5 |
12.3 (1527) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
23792 (7.9) |
| 2 |
19976 (10.0) |
| 3 |
19857 (9.4) |
| 4 |
19703 (9.6) |
| 5 |
17428 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot