NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,873.8 |
| Mean read quality |
9.5 |
| Median read length |
1,332.0 |
| Median read quality |
10.2 |
| Number of reads |
920.0 |
| Read length N50 |
2,546.0 |
| STDEV read length |
1,623.5 |
| Total bases |
1,723,872.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
920 (100.0%) 1.7Mb |
| >Q7 |
920 (100.0%) 1.7Mb |
| >Q10 |
520 (56.5%) 0.9Mb |
| >Q12 |
24 (2.6%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (911) |
| 2 |
13.2 (718) |
| 3 |
13.1 (831) |
| 4 |
12.8 (573) |
| 5 |
12.7 (1378) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12751 (10.3) |
| 2 |
12146 (9.0) |
| 3 |
10377 (7.6) |
| 4 |
10188 (10.4) |
| 5 |
9931 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot