NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
898.3 |
| Mean read quality |
8.8 |
| Median read length |
682.5 |
| Median read quality |
9.4 |
| Number of reads |
266.0 |
| Read length N50 |
847.0 |
| STDEV read length |
945.0 |
| Total bases |
238,956.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
266 (100.0%) 0.2Mb |
| >Q7 |
266 (100.0%) 0.2Mb |
| >Q10 |
100 (37.6%) 0.1Mb |
| >Q12 |
1 (0.4%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.9 (514) |
| 2 |
12.0 (513) |
| 3 |
11.9 (533) |
| 4 |
11.8 (950) |
| 5 |
11.8 (1156) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11043 (11.1) |
| 2 |
9389 (9.7) |
| 3 |
4362 (10.0) |
| 4 |
3991 (9.6) |
| 5 |
3091 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot