NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,061.6 |
| Mean read quality |
10.0 |
| Median read length |
817.0 |
| Median read quality |
10.5 |
| Number of reads |
31.0 |
| Read length N50 |
1,274.0 |
| STDEV read length |
545.7 |
| Total bases |
32,911.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
31 (100.0%) 0.0Mb |
| >Q7 |
31 (100.0%) 0.0Mb |
| >Q10 |
24 (77.4%) 0.0Mb |
| >Q12 |
2 (6.5%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.9 (1452) |
| 2 |
12.1 (1274) |
| 3 |
11.9 (1107) |
| 4 |
11.8 (1017) |
| 5 |
11.8 (1683) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2410 (11.1) |
| 2 |
2288 (11.1) |
| 3 |
1995 (10.1) |
| 4 |
1985 (11.2) |
| 5 |
1708 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot