NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,661.5 |
| Mean read quality |
9.2 |
| Median read length |
1,121.0 |
| Median read quality |
9.9 |
| Number of reads |
6,380.0 |
| Read length N50 |
2,177.0 |
| STDEV read length |
1,537.0 |
| Total bases |
10,600,530.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6380 (100.0%) 10.6Mb |
| >Q7 |
6376 (99.9%) 10.6Mb |
| >Q10 |
2870 (45.0%) 4.4Mb |
| >Q12 |
208 (3.3%) 0.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.3 (810) |
| 2 |
14.2 (1228) |
| 3 |
14.1 (818) |
| 4 |
14.1 (621) |
| 5 |
14.0 (584) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17738 (8.4) |
| 2 |
15443 (8.6) |
| 3 |
15132 (9.6) |
| 4 |
14671 (10.1) |
| 5 |
13376 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot