NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,375.9 |
| Mean read quality |
8.9 |
| Median read length |
2,361.0 |
| Median read quality |
9.5 |
| Number of reads |
11,185.0 |
| Read length N50 |
5,109.0 |
| STDEV read length |
3,030.5 |
| Total bases |
37,758,970.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11185 (100.0%) 37.8Mb |
| >Q7 |
11185 (100.0%) 37.8Mb |
| >Q10 |
3020 (27.0%) 9.6Mb |
| >Q12 |
20 (0.2%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.9 (864) |
| 2 |
12.6 (545) |
| 3 |
12.4 (1890) |
| 4 |
12.3 (1115) |
| 5 |
12.3 (914) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24476 (9.5) |
| 2 |
23270 (9.4) |
| 3 |
23214 (8.9) |
| 4 |
22969 (9.6) |
| 5 |
22093 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot