NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,158.4 |
| Mean read quality |
9.2 |
| Median read length |
828.0 |
| Median read quality |
10.1 |
| Number of reads |
43.0 |
| Read length N50 |
1,410.0 |
| STDEV read length |
834.8 |
| Total bases |
49,813.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
43 (100.0%) 0.0Mb |
| >Q7 |
43 (100.0%) 0.0Mb |
| >Q10 |
23 (53.5%) 0.0Mb |
| >Q12 |
1 (2.3%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.8 (828) |
| 2 |
11.5 (3597) |
| 3 |
11.2 (1107) |
| 4 |
11.2 (500) |
| 5 |
10.9 (1162) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4197 (10.5) |
| 2 |
3597 (11.5) |
| 3 |
2929 (7.7) |
| 4 |
2877 (10.9) |
| 5 |
2180 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot