NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,761.3 |
| Mean read quality |
9.2 |
| Median read length |
824.5 |
| Median read quality |
9.9 |
| Number of reads |
510.0 |
| Read length N50 |
3,264.0 |
| STDEV read length |
2,695.5 |
| Total bases |
898,281.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
510 (100.0%) 0.9Mb |
| >Q7 |
508 (99.6%) 0.9Mb |
| >Q10 |
233 (45.7%) 0.4Mb |
| >Q12 |
17 (3.3%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.2 (637) |
| 2 |
13.2 (530) |
| 3 |
13.0 (511) |
| 4 |
12.5 (637) |
| 5 |
12.4 (559) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
30305 (9.6) |
| 2 |
22400 (10.7) |
| 3 |
18991 (9.7) |
| 4 |
15625 (8.5) |
| 5 |
14514 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot