NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
975.4 |
| Mean read quality |
8.1 |
| Median read length |
704.0 |
| Median read quality |
8.7 |
| Number of reads |
99.0 |
| Read length N50 |
977.0 |
| STDEV read length |
1,023.7 |
| Total bases |
96,568.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
99 (100.0%) 0.1Mb |
| >Q7 |
99 (100.0%) 0.1Mb |
| >Q10 |
8 (8.1%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.3 (535) |
| 2 |
10.9 (513) |
| 3 |
10.7 (777) |
| 4 |
10.4 (562) |
| 5 |
10.2 (1145) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9042 (7.9) |
| 2 |
4661 (8.9) |
| 3 |
4525 (8.4) |
| 4 |
2002 (7.4) |
| 5 |
1829 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot