NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
806.0 |
| Mean read quality |
8.4 |
| Median read length |
640.0 |
| Median read quality |
9.0 |
| Number of reads |
65.0 |
| Read length N50 |
784.0 |
| STDEV read length |
568.8 |
| Total bases |
52,393.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
65 (100.0%) 0.1Mb |
| >Q7 |
65 (100.0%) 0.1Mb |
| >Q10 |
9 (13.8%) 0.0Mb |
| >Q12 |
1 (1.5%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.9 (640) |
| 2 |
12.0 (685) |
| 3 |
11.6 (1018) |
| 4 |
11.1 (584) |
| 5 |
11.1 (539) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4746 (9.3) |
| 2 |
1716 (9.5) |
| 3 |
1676 (9.7) |
| 4 |
1668 (9.2) |
| 5 |
1300 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot