NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,142.4 |
| Mean read quality |
8.7 |
| Median read length |
728.0 |
| Median read quality |
9.3 |
| Number of reads |
272.0 |
| Read length N50 |
1,259.0 |
| STDEV read length |
1,694.5 |
| Total bases |
310,723.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
272 (100.0%) 0.3Mb |
| >Q7 |
272 (100.0%) 0.3Mb |
| >Q10 |
75 (27.6%) 0.1Mb |
| >Q12 |
4 (1.5%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (747) |
| 2 |
12.5 (2015) |
| 3 |
12.4 (669) |
| 4 |
12.0 (539) |
| 5 |
12.0 (569) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18213 (9.6) |
| 2 |
17647 (8.9) |
| 3 |
7230 (9.4) |
| 4 |
6611 (9.5) |
| 5 |
5462 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot