NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,290.9 |
| Mean read quality |
9.8 |
| Median read length |
1,344.0 |
| Median read quality |
10.6 |
| Number of reads |
235.0 |
| Read length N50 |
3,732.0 |
| STDEV read length |
2,523.9 |
| Total bases |
538,364.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
235 (100.0%) 0.5Mb |
| >Q7 |
235 (100.0%) 0.5Mb |
| >Q10 |
163 (69.4%) 0.4Mb |
| >Q12 |
17 (7.2%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.3 (694) |
| 2 |
13.5 (1358) |
| 3 |
12.9 (919) |
| 4 |
12.7 (831) |
| 5 |
12.5 (953) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16906 (7.6) |
| 2 |
12307 (10.8) |
| 3 |
12225 (10.0) |
| 4 |
11982 (9.1) |
| 5 |
11826 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot