NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,174.1 |
| Mean read quality |
7.9 |
| Median read length |
725.0 |
| Median read quality |
8.4 |
| Number of reads |
325.0 |
| Read length N50 |
1,299.0 |
| STDEV read length |
1,576.5 |
| Total bases |
381,598.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
325 (100.0%) 0.4Mb |
| >Q7 |
324 (99.7%) 0.4Mb |
| >Q10 |
18 (5.5%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.0 (728) |
| 2 |
11.0 (1310) |
| 3 |
10.8 (656) |
| 4 |
10.6 (2604) |
| 5 |
10.4 (513) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17661 (7.3) |
| 2 |
12044 (8.7) |
| 3 |
11746 (10.0) |
| 4 |
7313 (8.8) |
| 5 |
7220 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot