NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,505.4 |
| Mean read quality |
7.9 |
| Median read length |
751.5 |
| Median read quality |
8.4 |
| Number of reads |
444.0 |
| Read length N50 |
2,418.0 |
| STDEV read length |
2,447.7 |
| Total bases |
668,410.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
444 (100.0%) 0.7Mb |
| >Q7 |
439 (98.9%) 0.7Mb |
| >Q10 |
22 (5.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.9 (749) |
| 2 |
10.9 (830) |
| 3 |
10.9 (512) |
| 4 |
10.8 (749) |
| 5 |
10.7 (527) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
29909 (8.6) |
| 2 |
16826 (8.7) |
| 3 |
14000 (7.9) |
| 4 |
13939 (8.8) |
| 5 |
12226 (8.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot