NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,952.1 |
| Mean read quality |
8.9 |
| Median read length |
874.0 |
| Median read quality |
9.6 |
| Number of reads |
443.0 |
| Read length N50 |
4,206.0 |
| STDEV read length |
2,789.7 |
| Total bases |
864,762.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
443 (100.0%) 0.9Mb |
| >Q7 |
442 (99.8%) 0.9Mb |
| >Q10 |
160 (36.1%) 0.3Mb |
| >Q12 |
8 (1.8%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (662) |
| 2 |
13.0 (524) |
| 3 |
12.9 (2839) |
| 4 |
12.5 (571) |
| 5 |
12.4 (691) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
31583 (8.7) |
| 2 |
15370 (9.7) |
| 3 |
14493 (11.1) |
| 4 |
13197 (8.4) |
| 5 |
12491 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot