NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,270.4 |
| Mean read quality |
9.2 |
| Median read length |
932.0 |
| Median read quality |
9.9 |
| Number of reads |
315.0 |
| Read length N50 |
1,509.0 |
| STDEV read length |
978.3 |
| Total bases |
400,168.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
315 (100.0%) 0.4Mb |
| >Q7 |
315 (100.0%) 0.4Mb |
| >Q10 |
147 (46.7%) 0.2Mb |
| >Q12 |
6 (1.9%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.5 (935) |
| 2 |
12.4 (809) |
| 3 |
12.3 (621) |
| 4 |
12.2 (1336) |
| 5 |
12.1 (803) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8079 (8.9) |
| 2 |
7690 (9.2) |
| 3 |
5585 (9.5) |
| 4 |
4636 (10.8) |
| 5 |
4360 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot