user_genome	classification	closest_genome_reference	closest_genome_reference_radius	closest_genome_taxonomy	closest_genome_ani	closest_genome_af	closest_placement_reference	closest_placement_radius	closest_placement_taxonomy	closest_placement_ani	closest_placement_af	pplacer_taxonomy	classification_method	note	other_related_references(genome_id,species_name,radius,ANI,AF)	msa_percent	translation_table	red_value	warnings
bin.0	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides hominis	GCF_014287585.1	95.0	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides hominis	98.84	0.862	GCF_014287585.1	95.0	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides hominis	98.84	0.862	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__	taxonomic classification defined by topology and ANI	topological placement and ANI have congruent species assignments	GCF_902493135.1, s__Parabacteroides sp902493135, 95.0, 91.6, 0.667; GCF_025151215.1, s__Parabacteroides merdae, 95.0, 89.95, 0.593; GCA_019411205.1, s__Parabacteroides sp019411205, 95.0, 89.76, 0.636; GCF_025151045.1, s__Parabacteroides johnsonii, 95.0, 89.5, 0.567; GCA_900760525.1, s__Parabacteroides sp900760525, 95.0, 88.79, 0.595; GCF_900155425.1, s__Parabacteroides massiliensis, 95.0, 87.92, 0.448; GCA_910577325.1, s__Parabacteroides sp910577325, 95.0, 87.47, 0.483; GCA_017937385.1, s__Parabacteroides sp017937385, 95.0, 84.31, 0.341; GCF_003363715.1, s__Parabacteroides acidifaciens, 95.0, 82.72, 0.287; GCF_900552465.1, s__Parabacteroides sp900552465, 95.0, 82.67, 0.296	75.13	11	N/A	N/A
bin.1	d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__Enterococcus_B faecium	GCF_029023785.1	95.0	d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__Enterococcus_B faecium	98.97	0.883	GCF_029023785.1	95.0	d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__Enterococcus_B faecium	98.97	0.883	d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B;s__	taxonomic classification defined by topology and ANI	topological placement and ANI have congruent species assignments	GCF_015751045.1, s__Enterococcus_B lactis, 95.0, 94.22, 0.76; GCF_011038845.1, s__Enterococcus_B sp011038845, 95.0, 81.04, 0.152	65.86	11	N/A	N/A
bin.10	Unclassified Bacteria	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	Insufficient number of amino acids in MSA (3.9%)
bin.11	Unclassified Bacteria	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	Insufficient number of amino acids in MSA (3.5%)
bin.12	Unclassified Bacteria	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	Insufficient number of amino acids in MSA (2.7%)
bin.2	d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus thermophilus	GCF_010120595.1	95.0	d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus thermophilus	98.53	0.92	GCF_010120595.1	95.0	d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus thermophilus	98.53	0.92	d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__	taxonomic classification defined by topology and ANI	topological placement and ANI have congruent species assignments	GCF_000188295.1, s__Streptococcus vestibularis, 95.0, 91.16, 0.736; GCF_902463925.1, s__Streptococcus sp902463925, 95.0, 90.93, 0.727; GCF_009738225.1, s__Streptococcus sp001556435, 95.0, 90.23, 0.722; GCA_003521145.1, s__Streptococcus sp003521145, 95.0, 90.18, 0.662; GCF_002094975.1, s__Streptococcus salivarius_D, 95.06, 89.55, 0.688; GCF_000785515.1, s__Streptococcus salivarius, 95.07, 89.37, 0.689; GCA_010604095.1, s__Streptococcus sp000187445, 95.0, 87.37, 0.612; GCF_934229725.1, s__Streptococcus sp934229725, 95.0, 87.14, 0.598	66.34	11	N/A	N/A
bin.3	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola dorei	GCF_013009555.1	95.0	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola dorei	98.9	0.781	GCF_013009555.1	95.0	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola dorei	98.9	0.781	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__	taxonomic classification defined by topology and ANI	topological placement and ANI have congruent species assignments	GCA_959599425.1, s__Phocaeicola sp959599425, 95.0, 96.19, 0.43; GCA_948566455.1, s__Phocaeicola sp948566455, 95.0, 95.68, 0.335; GCF_000012825.1, s__Phocaeicola vulgatus, 95.08, 95.58, 0.676; GCA_019414665.1, s__Phocaeicola sp019414665, 95.0, 94.35, 0.307; GCA_947574505.1, s__Phocaeicola sp947574505, 95.0, 94.31, 0.303; GCA_019414725.1, s__Phocaeicola sp019414725, 95.0, 93.88, 0.352; GCA_948579315.1, s__Phocaeicola sp948579315, 95.0, 93.55, 0.321; GCA_958434805.1, s__Phocaeicola sp958434805, 95.0, 93.55, 0.303; GCA_900760795.1, s__Phocaeicola sp900760795, 95.0, 91.88, 0.412; GCA_948956705.1, s__Phocaeicola sp948956705, 95.0, 90.13, 0.372; GCA_947072895.1, s__Phocaeicola sp011959205, 95.0, 89.52, 0.486; GCF_024622025.1, s__Phocaeicola sartorii, 95.0, 89.11, 0.513; GCA_947173895.1, s__Phocaeicola sp947173895, 95.0, 80.39, 0.163; GCA_902388365.1, s__Phocaeicola sp902388365, 95.0, 80.19, 0.153	62.84	11	N/A	N/A
bin.4	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides intestinalis_A	GCF_003464595.1	95.0	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides intestinalis_A	95.83	0.733	GCF_003464595.1	95.0	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides intestinalis_A	95.83	0.733	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__	taxonomic classification defined by topology and ANI	topological placement and ANI have congruent species assignments	GCF_902364365.1, s__Bacteroides sp900556215, 95.0, 94.38, 0.656; GCF_000172175.1, s__Bacteroides intestinalis, 96.89, 94.38, 0.639; GCF_959601035.1, s__Bacteroides sp900557355, 95.0, 93.29, 0.604; GCF_028539415.1, s__Bacteroides cellulosilyticus, 95.0, 88.41, 0.469; GCA_900759525.1, s__Bacteroides sp900759525, 95.0, 88.35, 0.399; GCF_000513195.1, s__Bacteroides timonensis, 95.0, 87.52, 0.405; GCF_020091405.1, s__Bacteroides sp900552405, 95.0, 87.39, 0.411; GCF_905207245.1, s__Bacteroides sp905207245, 95.0, 83.89, 0.288; GCA_947071285.1, s__Bacteroides sp947071285, 95.0, 83.61, 0.261; GCF_900142015.1, s__Bacteroides stercorirosoris, 95.0, 83.48, 0.249; GCF_000315485.1, s__Bacteroides oleiciplenus, 95.0, 82.89, 0.305; GCA_905215555.1, s__Bacteroides sp905215555, 95.0, 81.84, 0.222	67.51	11	N/A	N/A
bin.5	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis	GCF_025147485.1	95.0	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis	98.27	0.725	GCF_025147485.1	95.0	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis	98.27	0.725	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__	taxonomic classification defined by topology and ANI	topological placement and ANI have congruent species assignments	GCF_000614125.1, s__Bacteroides rodentium, 95.0, 94.06, 0.551; GCF_004793475.1, s__Bacteroides muris, 95.0, 91.73, 0.518; GCA_905197435.1, s__Bacteroides sp905197435, 95.0, 88.21, 0.509	64.05	11	N/A	N/A
bin.6	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides sp019412865	GCF_958387885.1	95.0	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides sp019412865	98.17	0.824	N/A	N/A	N/A	N/A	N/A	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__	taxonomic classification defined by topology and ANI	topological placement and ANI have incongruent species assignments	GCF_958387885.1, s__Bacteroides sp019412865, 95.0, 98.17, 0.824; GCF_001314995.1, s__Bacteroides ovatus, 95.19, 94.62, 0.684; GCA_019117555.1, s__Bacteroides intestinigallinarum, 95.0, 94.02, 0.606; GCA_902362375.1, s__Bacteroides sp902362375, 95.0, 93.45, 0.615; GCA_900755095.1, s__Bacteroides sp900755095, 95.0, 91.28, 0.466; GCF_000210075.1, s__Bacteroides xylanisolvens, 95.0, 90.52, 0.536; GCA_948436425.1, s__Bacteroides sp948436425, 95.0, 89.68, 0.513; GCF_009193295.2, s__Bacteroides luhongzhouii, 95.0, 89.44, 0.51; GCA_948742525.1, s__Bacteroides caecimuris_A, 95.0, 88.88, 0.436; GCF_001688725.2, s__Bacteroides caecimuris, 95.0, 88.1, 0.413; GCA_959606905.1, s__Bacteroides sp959606905, 95.0, 85.4, 0.18; GCA_030295565.1, s__Bacteroides finegoldii, 95.57, 85.23, 0.279; GCF_009193325.2, s__Bacteroides zhangwenhongii, 95.0, 84.72, 0.279; GCF_024623065.1, s__Bacteroides acidifaciens, 95.0, 84.55, 0.289; GCA_900556625.1, s__Bacteroides sp900556625, 95.0, 83.71, 0.269; GCF_903181435.1, s__Bacteroides sp900765785, 95.0, 83.28, 0.292; GCA_947038155.1, s__Bacteroides sp947038155, 95.0, 83.28, 0.278; GCF_012113595.1, s__Bacteroides faecium, 95.0, 83.13, 0.288; GCF_900130125.1, s__Bacteroides congonensis, 95.0, 83.02, 0.294; GCF_902491285.1, s__Bacteroides sp902491285, 95.0, 82.8, 0.268; GCF_014750685.1, s__Bacteroides sp014750685, 95.0, 82.66, 0.299; GCF_900761785.1, s__Bacteroides sp900761785, 95.0, 82.49, 0.265; GCF_002222615.2, s__Bacteroides caccae, 95.0, 82.31, 0.236; GCA_948847595.1, s__Bacteroides sp948847595, 95.0, 81.87, 0.228; GCF_000011065.1, s__Bacteroides thetaiotaomicron, 95.0, 81.26, 0.156; GCF_900547205.1, s__Bacteroides sp900547205, 95.0, 80.91, 0.151; GCA_019412825.1, s__Bacteroides thetaiotaomicron_A, 95.0, 80.34, 0.154	57.12	11	N/A	N/A
bin.7	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis	GCF_000012845.1	95.0	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis	98.23	0.867	GCF_000012845.1	95.0	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis	98.23	0.867	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__	taxonomic classification defined by topology and ANI	topological placement and ANI have congruent species assignments	GCF_004793765.1, s__Parabacteroides distasonis_A, 95.0, 93.69, 0.582; GCA_028689545.1, s__Parabacteroides sp028689545, 95.0, 89.82, 0.566; GCF_011038785.1, s__Parabacteroides sp011038785, 95.0, 89.8, 0.519; GCF_947855115.1, s__Parabacteroides sp947855115, 95.0, 87.24, 0.502	40.97	11	N/A	N/A
bin.8	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__	taxonomic classification defined by topology and ANI	classification based on placement in class-level tree	GCF_013009555.1, s__Phocaeicola dorei, 95.0, 95.31, 0.439; GCF_000012825.1, s__Phocaeicola vulgatus, 95.08, 93.2, 0.301; GCA_947574505.1, s__Phocaeicola sp947574505, 95.0, 92.1, 0.165; GCA_948579315.1, s__Phocaeicola sp948579315, 95.0, 90.28, 0.177; GCF_024622025.1, s__Phocaeicola sartorii, 95.0, 88.31, 0.258	10.19	11	0.97386	N/A
bin.9	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__	N/A	N/A	N/A	N/A	N/A	GCA_958432865.1	95.0	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercoris_A	N/A	N/A	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__	taxonomic classification defined by topology and ANI	classification based on placement in class-level tree	GCF_028539415.1, s__Bacteroides cellulosilyticus, 95.0, 91.93, 0.239; GCF_020091405.1, s__Bacteroides sp900552405, 95.0, 88.46, 0.166	12.73	11	0.99905	N/A
