# fastp report
Summary
General

fastp version: | 0.23.1 (https://github.com/OpenGene/fastp)
sequencing: | paired end (100 cycles + 100 cycles)
mean length before filtering: | 99bp, 99bp
mean length after filtering: | 99bp, 99bp
duplication rate: | 0.452820%
Insert size peak: | 148
Detected read1 adapter: | AGATCGGAAGAGCACACGTCTGAACTCCAGTCA
Detected read2 adapter: | AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Before filtering

total reads: | 40.478762 M
total bases: | 4.047871 G
Q20 bases: | 3.874300 G (95.712043%)
Q30 bases: | 3.494135 G (86.320315%)
GC content: | 47.438345%

After filtering

total reads: | 39.620418 M
total bases: | 3.946528 G
Q20 bases: | 3.809325 G (96.523427%)
Q30 bases: | 3.452702 G (87.487065%)
GC content: | 47.384061%

Filtering result

reads passed filters: | 39.620418 M (97.879520%)
reads with low quality: | 853.498000 K (2.108508%)
reads with too many N: | 4.236000 K (0.010465%)
reads too short: | 610 (0.001507%)

Adapters
Adapter or bad ligation of read1
The input has little adapter percentage (~0.395682%), probably it's trimmed before.

Sequence | Occurrences
A | 46224
AG | 43889
AGA | 41587
AGAT | 39354
AGATC | 53524
AGATCG | 40235
AGATCGG | 34422
AGATCGGA | 31620
AGATCGGAA | 29045
AGATCGGAAG | 27221
AGATCGGAAGA | 25258
AGATCGGAAGAG | 23751
AGATCGGAAGAGC | 21675
AGATCGGAAGAGCA | 20046
AGATCGGAAGAGCAC | 18634
AGATCGGAAGAGCACA | 17213
AGATCGGAAGAGCACAC | 15673
AGATCGGAAGAGCACACG | 14270
AGATCGGAAGAGCACACGT | 13033
AGATCGGAAGAGCACACGTC | 12054
AGATCGGAAGAGCACACGTCT | 10939
AGATCGGAAGAGCACACGTCTG | 9916
AGATCGGAAGAGCACACGTCTGA | 8789
AGATCGGAAGAGCACACGTCTGAA | 7974
AGATCGGAAGAGCACACGTCTGAAC | 7364
other adapter sequences | 90245

Adapter or bad ligation of read2
The input has little adapter percentage (~0.386873%), probably it's trimmed before.

Sequence | Occurrences
A | 46362
AG | 43931
AGA | 41629
AGAT | 39334
AGATC | 52790
AGATCG | 39651
AGATCGG | 33815
AGATCGGA | 31038
AGATCGGAA | 28539
AGATCGGAAG | 26677
AGATCGGAAGA | 24649
AGATCGGAAGAG | 23204
AGATCGGAAGAGC | 21150
AGATCGGAAGAGCG | 19710
AGATCGGAAGAGCGT | 18235
AGATCGGAAGAGCGTC | 16799
AGATCGGAAGAGCGTCG | 15386
AGATCGGAAGAGCGTCGT | 13978
AGATCGGAAGAGCGTCGTG | 12753
AGATCGGAAGAGCGTCGTGT | 11762
AGATCGGAAGAGCGTCGTGTA | 10647
AGATCGGAAGAGCGTCGTGTAG | 9665
AGATCGGAAGAGCGTCGTGTAGG | 8672
AGATCGGAAGAGCGTCGTGTAGGG | 7731
AGATCGGAAGAGCGTCGTGTAGGGA | 7039
other adapter sequences | 90103

Insert size estimation
This estimation is based on paired-end overlap analysis, and there are 48.603360% reads found not overlapped.
The nonoverlapped read pairs may have insert size <30 or >170, or contain too much sequencing errors to be detected as overlapped.
Before filtering
Before filtering: read1: quality
Value of each position will be shown on mouse over.
Before filtering: read1: base contents
Value of each position will be shown on mouse over.
Before filtering: read1: KMER counting
Darker background means larger counts. The count will be shown on mouse over.

| AA | AT | AC | AG | TA | TT | TC | TG | CA | CT | CC | CG | GA | GT | GC | GG
AAA | AAAAA | AAAAT | AAAAC | AAAAG | AAATA | AAATT | AAATC | AAATG | AAACA | AAACT | AAACC | AAACG | AAAGA | AAAGT | AAAGC | AAAGG
AAT | AATAA | AATAT | AATAC | AATAG | AATTA | AATTT | AATTC | AATTG | AATCA | AATCT | AATCC | AATCG | AATGA | AATGT | AATGC | AATGG
AAC | AACAA | AACAT | AACAC | AACAG | AACTA | AACTT | AACTC | AACTG | AACCA | AACCT | AACCC | AACCG | AACGA | AACGT | AACGC | AACGG
AAG | AAGAA | AAGAT | AAGAC | AAGAG | AAGTA | AAGTT | AAGTC | AAGTG | AAGCA | AAGCT | AAGCC | AAGCG | AAGGA | AAGGT | AAGGC | AAGGG
ATA | ATAAA | ATAAT | ATAAC | ATAAG | ATATA | ATATT | ATATC | ATATG | ATACA | ATACT | ATACC | ATACG | ATAGA | ATAGT | ATAGC | ATAGG
ATT | ATTAA | ATTAT | ATTAC | ATTAG | ATTTA | ATTTT | ATTTC | ATTTG | ATTCA | ATTCT | ATTCC | ATTCG | ATTGA | ATTGT | ATTGC | ATTGG
ATC | ATCAA | ATCAT | ATCAC | ATCAG | ATCTA | ATCTT | ATCTC | ATCTG | ATCCA | ATCCT | ATCCC | ATCCG | ATCGA | ATCGT | ATCGC | ATCGG
ATG | ATGAA | ATGAT | ATGAC | ATGAG | ATGTA | ATGTT | ATGTC | ATGTG | ATGCA | ATGCT | ATGCC | ATGCG | ATGGA | ATGGT | ATGGC | ATGGG
ACA | ACAAA | ACAAT | ACAAC | ACAAG | ACATA | ACATT | ACATC | ACATG | ACACA | ACACT | ACACC | ACACG | ACAGA | ACAGT | ACAGC | ACAGG
ACT | ACTAA | ACTAT | ACTAC | ACTAG | ACTTA | ACTTT | ACTTC | ACTTG | ACTCA | ACTCT | ACTCC | ACTCG | ACTGA | ACTGT | ACTGC | ACTGG
ACC | ACCAA | ACCAT | ACCAC | ACCAG | ACCTA | ACCTT | ACCTC | ACCTG | ACCCA | ACCCT | ACCCC | ACCCG | ACCGA | ACCGT | ACCGC | ACCGG
ACG | ACGAA | ACGAT | ACGAC | ACGAG | ACGTA | ACGTT | ACGTC | ACGTG | ACGCA | ACGCT | ACGCC | ACGCG | ACGGA | ACGGT | ACGGC | ACGGG
AGA | AGAAA | AGAAT | AGAAC | AGAAG | AGATA | AGATT | AGATC | AGATG | AGACA | AGACT | AGACC | AGACG | AGAGA | AGAGT | AGAGC | AGAGG
AGT | AGTAA | AGTAT | AGTAC | AGTAG | AGTTA | AGTTT | AGTTC | AGTTG | AGTCA | AGTCT | AGTCC | AGTCG | AGTGA | AGTGT | AGTGC | AGTGG
AGC | AGCAA | AGCAT | AGCAC | AGCAG | AGCTA | AGCTT | AGCTC | AGCTG | AGCCA | AGCCT | AGCCC | AGCCG | AGCGA | AGCGT | AGCGC | AGCGG
AGG | AGGAA | AGGAT | AGGAC | AGGAG | AGGTA | AGGTT | AGGTC | AGGTG | AGGCA | AGGCT | AGGCC | AGGCG | AGGGA | AGGGT | AGGGC | AGGGG
TAA | TAAAA | TAAAT | TAAAC | TAAAG | TAATA | TAATT | TAATC | TAATG | TAACA | TAACT | TAACC | TAACG | TAAGA | TAAGT | TAAGC | TAAGG
TAT | TATAA | TATAT | TATAC | TATAG | TATTA | TATTT | TATTC | TATTG | TATCA | TATCT | TATCC | TATCG | TATGA | TATGT | TATGC | TATGG
TAC | TACAA | TACAT | TACAC | TACAG | TACTA | TACTT | TACTC | TACTG | TACCA | TACCT | TACCC | TACCG | TACGA | TACGT | TACGC | TACGG
TAG | TAGAA | TAGAT | TAGAC | TAGAG | TAGTA | TAGTT | TAGTC | TAGTG | TAGCA | TAGCT | TAGCC | TAGCG | TAGGA | TAGGT | TAGGC | TAGGG
TTA | TTAAA | TTAAT | TTAAC | TTAAG | TTATA | TTATT | TTATC | TTATG | TTACA | TTACT | TTACC | TTACG | TTAGA | TTAGT | TTAGC | TTAGG
TTT | TTTAA | TTTAT | TTTAC | TTTAG | TTTTA | TTTTT | TTTTC | TTTTG | TTTCA | TTTCT | TTTCC | TTTCG | TTTGA | TTTGT | TTTGC | TTTGG
TTC | TTCAA | TTCAT | TTCAC | TTCAG | TTCTA | TTCTT | TTCTC | TTCTG | TTCCA | TTCCT | TTCCC | TTCCG | TTCGA | TTCGT | TTCGC | TTCGG
TTG | TTGAA | TTGAT | TTGAC | TTGAG | TTGTA | TTGTT | TTGTC | TTGTG | TTGCA | TTGCT | TTGCC | TTGCG | TTGGA | TTGGT | TTGGC | TTGGG
TCA | TCAAA | TCAAT | TCAAC | TCAAG | TCATA | TCATT | TCATC | TCATG | TCACA | TCACT | TCACC | TCACG | TCAGA | TCAGT | TCAGC | TCAGG
TCT | TCTAA | TCTAT | TCTAC | TCTAG | TCTTA | TCTTT | TCTTC | TCTTG | TCTCA | TCTCT | TCTCC | TCTCG | TCTGA | TCTGT | TCTGC | TCTGG
TCC | TCCAA | TCCAT | TCCAC | TCCAG | TCCTA | TCCTT | TCCTC | TCCTG | TCCCA | TCCCT | TCCCC | TCCCG | TCCGA | TCCGT | TCCGC | TCCGG
TCG | TCGAA | TCGAT | TCGAC | TCGAG | TCGTA | TCGTT | TCGTC | TCGTG | TCGCA | TCGCT | TCGCC | TCGCG | TCGGA | TCGGT | TCGGC | TCGGG
TGA | TGAAA | TGAAT | TGAAC | TGAAG | TGATA | TGATT | TGATC | TGATG | TGACA | TGACT | TGACC | TGACG | TGAGA | TGAGT | TGAGC | TGAGG
TGT | TGTAA | TGTAT | TGTAC | TGTAG | TGTTA | TGTTT | TGTTC | TGTTG | TGTCA | TGTCT | TGTCC | TGTCG | TGTGA | TGTGT | TGTGC | TGTGG
TGC | TGCAA | TGCAT | TGCAC | TGCAG | TGCTA | TGCTT | TGCTC | TGCTG | TGCCA | TGCCT | TGCCC | TGCCG | TGCGA | TGCGT | TGCGC | TGCGG
TGG | TGGAA | TGGAT | TGGAC | TGGAG | TGGTA | TGGTT | TGGTC | TGGTG | TGGCA | TGGCT | TGGCC | TGGCG | TGGGA | TGGGT | TGGGC | TGGGG
CAA | CAAAA | CAAAT | CAAAC | CAAAG | CAATA | CAATT | CAATC | CAATG | CAACA | CAACT | CAACC | CAACG | CAAGA | CAAGT | CAAGC | CAAGG
CAT | CATAA | CATAT | CATAC | CATAG | CATTA | CATTT | CATTC | CATTG | CATCA | CATCT | CATCC | CATCG | CATGA | CATGT | CATGC | CATGG
CAC | CACAA | CACAT | CACAC | CACAG | CACTA | CACTT | CACTC | CACTG | CACCA | CACCT | CACCC | CACCG | CACGA | CACGT | CACGC | CACGG
CAG | CAGAA | CAGAT | CAGAC | CAGAG | CAGTA | CAGTT | CAGTC | CAGTG | CAGCA | CAGCT | CAGCC | CAGCG | CAGGA | CAGGT | CAGGC | CAGGG
CTA | CTAAA | CTAAT | CTAAC | CTAAG | CTATA | CTATT | CTATC | CTATG | CTACA | CTACT | CTACC | CTACG | CTAGA | CTAGT | CTAGC | CTAGG
CTT | CTTAA | CTTAT | CTTAC | CTTAG | CTTTA | CTTTT | CTTTC | CTTTG | CTTCA | CTTCT | CTTCC | CTTCG | CTTGA | CTTGT | CTTGC | CTTGG
CTC | CTCAA | CTCAT | CTCAC | CTCAG | CTCTA | CTCTT | CTCTC | CTCTG | CTCCA | CTCCT | CTCCC | CTCCG | CTCGA | CTCGT | CTCGC | CTCGG
CTG | CTGAA | CTGAT | CTGAC | CTGAG | CTGTA | CTGTT | CTGTC | CTGTG | CTGCA | CTGCT | CTGCC | CTGCG | CTGGA | CTGGT | CTGGC | CTGGG
CCA | CCAAA | CCAAT | CCAAC | CCAAG | CCATA | CCATT | CCATC | CCATG | CCACA | CCACT | CCACC | CCACG | CCAGA | CCAGT | CCAGC | CCAGG
CCT | CCTAA | CCTAT | CCTAC | CCTAG | CCTTA | CCTTT | CCTTC | CCTTG | CCTCA | CCTCT | CCTCC | CCTCG | CCTGA | CCTGT | CCTGC | CCTGG
CCC | CCCAA | CCCAT | CCCAC | CCCAG | CCCTA | CCCTT | CCCTC | CCCTG | CCCCA | CCCCT | CCCCC | CCCCG | CCCGA | CCCGT | CCCGC | CCCGG
CCG | CCGAA | CCGAT | CCGAC | CCGAG | CCGTA | CCGTT | CCGTC | CCGTG | CCGCA | CCGCT | CCGCC | CCGCG | CCGGA | CCGGT | CCGGC | CCGGG
CGA | CGAAA | CGAAT | CGAAC | CGAAG | CGATA | CGATT | CGATC | CGATG | CGACA | CGACT | CGACC | CGACG | CGAGA | CGAGT | CGAGC | CGAGG
CGT | CGTAA | CGTAT | CGTAC | CGTAG | CGTTA | CGTTT | CGTTC | CGTTG | CGTCA | CGTCT | CGTCC | CGTCG | CGTGA | CGTGT | CGTGC | CGTGG
CGC | CGCAA | CGCAT | CGCAC | CGCAG | CGCTA | CGCTT | CGCTC | CGCTG | CGCCA | CGCCT | CGCCC | CGCCG | CGCGA | CGCGT | CGCGC | CGCGG
CGG | CGGAA | CGGAT | CGGAC | CGGAG | CGGTA | CGGTT | CGGTC | CGGTG | CGGCA | CGGCT | CGGCC | CGGCG | CGGGA | CGGGT | CGGGC | CGGGG
GAA | GAAAA | GAAAT | GAAAC | GAAAG | GAATA | GAATT | GAATC | GAATG | GAACA | GAACT | GAACC | GAACG | GAAGA | GAAGT | GAAGC | GAAGG
GAT | GATAA | GATAT | GATAC | GATAG | GATTA | GATTT | GATTC | GATTG | GATCA | GATCT | GATCC | GATCG | GATGA | GATGT | GATGC | GATGG
GAC | GACAA | GACAT | GACAC | GACAG | GACTA | GACTT | GACTC | GACTG | GACCA | GACCT | GACCC | GACCG | GACGA | GACGT | GACGC | GACGG
GAG | GAGAA | GAGAT | GAGAC | GAGAG | GAGTA | GAGTT | GAGTC | GAGTG | GAGCA | GAGCT | GAGCC | GAGCG | GAGGA | GAGGT | GAGGC | GAGGG
GTA | GTAAA | GTAAT | GTAAC | GTAAG | GTATA | GTATT | GTATC | GTATG | GTACA | GTACT | GTACC | GTACG | GTAGA | GTAGT | GTAGC | GTAGG
GTT | GTTAA | GTTAT | GTTAC | GTTAG | GTTTA | GTTTT | GTTTC | GTTTG | GTTCA | GTTCT | GTTCC | GTTCG | GTTGA | GTTGT | GTTGC | GTTGG
GTC | GTCAA | GTCAT | GTCAC | GTCAG | GTCTA | GTCTT | GTCTC | GTCTG | GTCCA | GTCCT | GTCCC | GTCCG | GTCGA | GTCGT | GTCGC | GTCGG
GTG | GTGAA | GTGAT | GTGAC | GTGAG | GTGTA | GTGTT | GTGTC | GTGTG | GTGCA | GTGCT | GTGCC | GTGCG | GTGGA | GTGGT | GTGGC | GTGGG
GCA | GCAAA | GCAAT | GCAAC | GCAAG | GCATA | GCATT | GCATC | GCATG | GCACA | GCACT | GCACC | GCACG | GCAGA | GCAGT | GCAGC | GCAGG
GCT | GCTAA | GCTAT | GCTAC | GCTAG | GCTTA | GCTTT | GCTTC | GCTTG | GCTCA | GCTCT | GCTCC | GCTCG | GCTGA | GCTGT | GCTGC | GCTGG
GCC | GCCAA | GCCAT | GCCAC | GCCAG | GCCTA | GCCTT | GCCTC | GCCTG | GCCCA | GCCCT | GCCCC | GCCCG | GCCGA | GCCGT | GCCGC | GCCGG
GCG | GCGAA | GCGAT | GCGAC | GCGAG | GCGTA | GCGTT | GCGTC | GCGTG | GCGCA | GCGCT | GCGCC | GCGCG | GCGGA | GCGGT | GCGGC | GCGGG
GGA | GGAAA | GGAAT | GGAAC | GGAAG | GGATA | GGATT | GGATC | GGATG | GGACA | GGACT | GGACC | GGACG | GGAGA | GGAGT | GGAGC | GGAGG
GGT | GGTAA | GGTAT | GGTAC | GGTAG | GGTTA | GGTTT | GGTTC | GGTTG | GGTCA | GGTCT | GGTCC | GGTCG | GGTGA | GGTGT | GGTGC | GGTGG
GGC | GGCAA | GGCAT | GGCAC | GGCAG | GGCTA | GGCTT | GGCTC | GGCTG | GGCCA | GGCCT | GGCCC | GGCCG | GGCGA | GGCGT | GGCGC | GGCGG
GGG | GGGAA | GGGAT | GGGAC | GGGAG | GGGTA | GGGTT | GGGTC | GGGTG | GGGCA | GGGCT | GGGCC | GGGCG | GGGGA | GGGGT | GGGGC | GGGGG

Before filtering: read2: quality
Value of each position will be shown on mouse over.
Before filtering: read2: base contents
Value of each position will be shown on mouse over.
Before filtering: read2: KMER counting
Darker background means larger counts. The count will be shown on mouse over.

| AA | AT | AC | AG | TA | TT | TC | TG | CA | CT | CC | CG | GA | GT | GC | GG
AAA | AAAAA | AAAAT | AAAAC | AAAAG | AAATA | AAATT | AAATC | AAATG | AAACA | AAACT | AAACC | AAACG | AAAGA | AAAGT | AAAGC | AAAGG
AAT | AATAA | AATAT | AATAC | AATAG | AATTA | AATTT | AATTC | AATTG | AATCA | AATCT | AATCC | AATCG | AATGA | AATGT | AATGC | AATGG
AAC | AACAA | AACAT | AACAC | AACAG | AACTA | AACTT | AACTC | AACTG | AACCA | AACCT | AACCC | AACCG | AACGA | AACGT | AACGC | AACGG
AAG | AAGAA | AAGAT | AAGAC | AAGAG | AAGTA | AAGTT | AAGTC | AAGTG | AAGCA | AAGCT | AAGCC | AAGCG | AAGGA | AAGGT | AAGGC | AAGGG
ATA | ATAAA | ATAAT | ATAAC | ATAAG | ATATA | ATATT | ATATC | ATATG | ATACA | ATACT | ATACC | ATACG | ATAGA | ATAGT | ATAGC | ATAGG
ATT | ATTAA | ATTAT | ATTAC | ATTAG | ATTTA | ATTTT | ATTTC | ATTTG | ATTCA | ATTCT | ATTCC | ATTCG | ATTGA | ATTGT | ATTGC | ATTGG
ATC | ATCAA | ATCAT | ATCAC | ATCAG | ATCTA | ATCTT | ATCTC | ATCTG | ATCCA | ATCCT | ATCCC | ATCCG | ATCGA | ATCGT | ATCGC | ATCGG
ATG | ATGAA | ATGAT | ATGAC | ATGAG | ATGTA | ATGTT | ATGTC | ATGTG | ATGCA | ATGCT | ATGCC | ATGCG | ATGGA | ATGGT | ATGGC | ATGGG
ACA | ACAAA | ACAAT | ACAAC | ACAAG | ACATA | ACATT | ACATC | ACATG | ACACA | ACACT | ACACC | ACACG | ACAGA | ACAGT | ACAGC | ACAGG
ACT | ACTAA | ACTAT | ACTAC | ACTAG | ACTTA | ACTTT | ACTTC | ACTTG | ACTCA | ACTCT | ACTCC | ACTCG | ACTGA | ACTGT | ACTGC | ACTGG
ACC | ACCAA | ACCAT | ACCAC | ACCAG | ACCTA | ACCTT | ACCTC | ACCTG | ACCCA | ACCCT | ACCCC | ACCCG | ACCGA | ACCGT | ACCGC | ACCGG
ACG | ACGAA | ACGAT | ACGAC | ACGAG | ACGTA | ACGTT | ACGTC | ACGTG | ACGCA | ACGCT | ACGCC | ACGCG | ACGGA | ACGGT | ACGGC | ACGGG
AGA | AGAAA | AGAAT | AGAAC | AGAAG | AGATA | AGATT | AGATC | AGATG | AGACA | AGACT | AGACC | AGACG | AGAGA | AGAGT | AGAGC | AGAGG
AGT | AGTAA | AGTAT | AGTAC | AGTAG | AGTTA | AGTTT | AGTTC | AGTTG | AGTCA | AGTCT | AGTCC | AGTCG | AGTGA | AGTGT | AGTGC | AGTGG
AGC | AGCAA | AGCAT | AGCAC | AGCAG | AGCTA | AGCTT | AGCTC | AGCTG | AGCCA | AGCCT | AGCCC | AGCCG | AGCGA | AGCGT | AGCGC | AGCGG
AGG | AGGAA | AGGAT | AGGAC | AGGAG | AGGTA | AGGTT | AGGTC | AGGTG | AGGCA | AGGCT | AGGCC | AGGCG | AGGGA | AGGGT | AGGGC | AGGGG
TAA | TAAAA | TAAAT | TAAAC | TAAAG | TAATA | TAATT | TAATC | TAATG | TAACA | TAACT | TAACC | TAACG | TAAGA | TAAGT | TAAGC | TAAGG
TAT | TATAA | TATAT | TATAC | TATAG | TATTA | TATTT | TATTC | TATTG | TATCA | TATCT | TATCC | TATCG | TATGA | TATGT | TATGC | TATGG
TAC | TACAA | TACAT | TACAC | TACAG | TACTA | TACTT | TACTC | TACTG | TACCA | TACCT | TACCC | TACCG | TACGA | TACGT | TACGC | TACGG
TAG | TAGAA | TAGAT | TAGAC | TAGAG | TAGTA | TAGTT | TAGTC | TAGTG | TAGCA | TAGCT | TAGCC | TAGCG | TAGGA | TAGGT | TAGGC | TAGGG
TTA | TTAAA | TTAAT | TTAAC | TTAAG | TTATA | TTATT | TTATC | TTATG | TTACA | TTACT | TTACC | TTACG | TTAGA | TTAGT | TTAGC | TTAGG
TTT | TTTAA | TTTAT | TTTAC | TTTAG | TTTTA | TTTTT | TTTTC | TTTTG | TTTCA | TTTCT | TTTCC | TTTCG | TTTGA | TTTGT | TTTGC | TTTGG
TTC | TTCAA | TTCAT | TTCAC | TTCAG | TTCTA | TTCTT | TTCTC | TTCTG | TTCCA | TTCCT | TTCCC | TTCCG | TTCGA | TTCGT | TTCGC | TTCGG
TTG | TTGAA | TTGAT | TTGAC | TTGAG | TTGTA | TTGTT | TTGTC | TTGTG | TTGCA | TTGCT | TTGCC | TTGCG | TTGGA | TTGGT | TTGGC | TTGGG
TCA | TCAAA | TCAAT | TCAAC | TCAAG | TCATA | TCATT | TCATC | TCATG | TCACA | TCACT | TCACC | TCACG | TCAGA | TCAGT | TCAGC | TCAGG
TCT | TCTAA | TCTAT | TCTAC | TCTAG | TCTTA | TCTTT | TCTTC | TCTTG | TCTCA | TCTCT | TCTCC | TCTCG | TCTGA | TCTGT | TCTGC | TCTGG
TCC | TCCAA | TCCAT | TCCAC | TCCAG | TCCTA | TCCTT | TCCTC | TCCTG | TCCCA | TCCCT | TCCCC | TCCCG | TCCGA | TCCGT | TCCGC | TCCGG
TCG | TCGAA | TCGAT | TCGAC | TCGAG | TCGTA | TCGTT | TCGTC | TCGTG | TCGCA | TCGCT | TCGCC | TCGCG | TCGGA | TCGGT | TCGGC | TCGGG
TGA | TGAAA | TGAAT | TGAAC | TGAAG | TGATA | TGATT | TGATC | TGATG | TGACA | TGACT | TGACC | TGACG | TGAGA | TGAGT | TGAGC | TGAGG
TGT | TGTAA | TGTAT | TGTAC | TGTAG | TGTTA | TGTTT | TGTTC | TGTTG | TGTCA | TGTCT | TGTCC | TGTCG | TGTGA | TGTGT | TGTGC | TGTGG
TGC | TGCAA | TGCAT | TGCAC | TGCAG | TGCTA | TGCTT | TGCTC | TGCTG | TGCCA | TGCCT | TGCCC | TGCCG | TGCGA | TGCGT | TGCGC | TGCGG
TGG | TGGAA | TGGAT | TGGAC | TGGAG | TGGTA | TGGTT | TGGTC | TGGTG | TGGCA | TGGCT | TGGCC | TGGCG | TGGGA | TGGGT | TGGGC | TGGGG
CAA | CAAAA | CAAAT | CAAAC | CAAAG | CAATA | CAATT | CAATC | CAATG | CAACA | CAACT | CAACC | CAACG | CAAGA | CAAGT | CAAGC | CAAGG
CAT | CATAA | CATAT | CATAC | CATAG | CATTA | CATTT | CATTC | CATTG | CATCA | CATCT | CATCC | CATCG | CATGA | CATGT | CATGC | CATGG
CAC | CACAA | CACAT | CACAC | CACAG | CACTA | CACTT | CACTC | CACTG | CACCA | CACCT | CACCC | CACCG | CACGA | CACGT | CACGC | CACGG
CAG | CAGAA | CAGAT | CAGAC | CAGAG | CAGTA | CAGTT | CAGTC | CAGTG | CAGCA | CAGCT | CAGCC | CAGCG | CAGGA | CAGGT | CAGGC | CAGGG
CTA | CTAAA | CTAAT | CTAAC | CTAAG | CTATA | CTATT | CTATC | CTATG | CTACA | CTACT | CTACC | CTACG | CTAGA | CTAGT | CTAGC | CTAGG
CTT | CTTAA | CTTAT | CTTAC | CTTAG | CTTTA | CTTTT | CTTTC | CTTTG | CTTCA | CTTCT | CTTCC | CTTCG | CTTGA | CTTGT | CTTGC | CTTGG
CTC | CTCAA | CTCAT | CTCAC | CTCAG | CTCTA | CTCTT | CTCTC | CTCTG | CTCCA | CTCCT | CTCCC | CTCCG | CTCGA | CTCGT | CTCGC | CTCGG
CTG | CTGAA | CTGAT | CTGAC | CTGAG | CTGTA | CTGTT | CTGTC | CTGTG | CTGCA | CTGCT | CTGCC | CTGCG | CTGGA | CTGGT | CTGGC | CTGGG
CCA | CCAAA | CCAAT | CCAAC | CCAAG | CCATA | CCATT | CCATC | CCATG | CCACA | CCACT | CCACC | CCACG | CCAGA | CCAGT | CCAGC | CCAGG
CCT | CCTAA | CCTAT | CCTAC | CCTAG | CCTTA | CCTTT | CCTTC | CCTTG | CCTCA | CCTCT | CCTCC | CCTCG | CCTGA | CCTGT | CCTGC | CCTGG
CCC | CCCAA | CCCAT | CCCAC | CCCAG | CCCTA | CCCTT | CCCTC | CCCTG | CCCCA | CCCCT | CCCCC | CCCCG | CCCGA | CCCGT | CCCGC | CCCGG
CCG | CCGAA | CCGAT | CCGAC | CCGAG | CCGTA | CCGTT | CCGTC | CCGTG | CCGCA | CCGCT | CCGCC | CCGCG | CCGGA | CCGGT | CCGGC | CCGGG
CGA | CGAAA | CGAAT | CGAAC | CGAAG | CGATA | CGATT | CGATC | CGATG | CGACA | CGACT | CGACC | CGACG | CGAGA | CGAGT | CGAGC | CGAGG
CGT | CGTAA | CGTAT | CGTAC | CGTAG | CGTTA | CGTTT | CGTTC | CGTTG | CGTCA | CGTCT | CGTCC | CGTCG | CGTGA | CGTGT | CGTGC | CGTGG
CGC | CGCAA | CGCAT | CGCAC | CGCAG | CGCTA | CGCTT | CGCTC | CGCTG | CGCCA | CGCCT | CGCCC | CGCCG | CGCGA | CGCGT | CGCGC | CGCGG
CGG | CGGAA | CGGAT | CGGAC | CGGAG | CGGTA | CGGTT | CGGTC | CGGTG | CGGCA | CGGCT | CGGCC | CGGCG | CGGGA | CGGGT | CGGGC | CGGGG
GAA | GAAAA | GAAAT | GAAAC | GAAAG | GAATA | GAATT | GAATC | GAATG | GAACA | GAACT | GAACC | GAACG | GAAGA | GAAGT | GAAGC | GAAGG
GAT | GATAA | GATAT | GATAC | GATAG | GATTA | GATTT | GATTC | GATTG | GATCA | GATCT | GATCC | GATCG | GATGA | GATGT | GATGC | GATGG
GAC | GACAA | GACAT | GACAC | GACAG | GACTA | GACTT | GACTC | GACTG | GACCA | GACCT | GACCC | GACCG | GACGA | GACGT | GACGC | GACGG
GAG | GAGAA | GAGAT | GAGAC | GAGAG | GAGTA | GAGTT | GAGTC | GAGTG | GAGCA | GAGCT | GAGCC | GAGCG | GAGGA | GAGGT | GAGGC | GAGGG
GTA | GTAAA | GTAAT | GTAAC | GTAAG | GTATA | GTATT | GTATC | GTATG | GTACA | GTACT | GTACC | GTACG | GTAGA | GTAGT | GTAGC | GTAGG
GTT | GTTAA | GTTAT | GTTAC | GTTAG | GTTTA | GTTTT | GTTTC | GTTTG | GTTCA | GTTCT | GTTCC | GTTCG | GTTGA | GTTGT | GTTGC | GTTGG
GTC | GTCAA | GTCAT | GTCAC | GTCAG | GTCTA | GTCTT | GTCTC | GTCTG | GTCCA | GTCCT | GTCCC | GTCCG | GTCGA | GTCGT | GTCGC | GTCGG
GTG | GTGAA | GTGAT | GTGAC | GTGAG | GTGTA | GTGTT | GTGTC | GTGTG | GTGCA | GTGCT | GTGCC | GTGCG | GTGGA | GTGGT | GTGGC | GTGGG
GCA | GCAAA | GCAAT | GCAAC | GCAAG | GCATA | GCATT | GCATC | GCATG | GCACA | GCACT | GCACC | GCACG | GCAGA | GCAGT | GCAGC | GCAGG
GCT | GCTAA | GCTAT | GCTAC | GCTAG | GCTTA | GCTTT | GCTTC | GCTTG | GCTCA | GCTCT | GCTCC | GCTCG | GCTGA | GCTGT | GCTGC | GCTGG
GCC | GCCAA | GCCAT | GCCAC | GCCAG | GCCTA | GCCTT | GCCTC | GCCTG | GCCCA | GCCCT | GCCCC | GCCCG | GCCGA | GCCGT | GCCGC | GCCGG
GCG | GCGAA | GCGAT | GCGAC | GCGAG | GCGTA | GCGTT | GCGTC | GCGTG | GCGCA | GCGCT | GCGCC | GCGCG | GCGGA | GCGGT | GCGGC | GCGGG
GGA | GGAAA | GGAAT | GGAAC | GGAAG | GGATA | GGATT | GGATC | GGATG | GGACA | GGACT | GGACC | GGACG | GGAGA | GGAGT | GGAGC | GGAGG
GGT | GGTAA | GGTAT | GGTAC | GGTAG | GGTTA | GGTTT | GGTTC | GGTTG | GGTCA | GGTCT | GGTCC | GGTCG | GGTGA | GGTGT | GGTGC | GGTGG
GGC | GGCAA | GGCAT | GGCAC | GGCAG | GGCTA | GGCTT | GGCTC | GGCTG | GGCCA | GGCCT | GGCCC | GGCCG | GGCGA | GGCGT | GGCGC | GGCGG
GGG | GGGAA | GGGAT | GGGAC | GGGAG | GGGTA | GGGTT | GGGTC | GGGTG | GGGCA | GGGCT | GGGCC | GGGCG | GGGGA | GGGGT | GGGGC | GGGGG

After filtering
After filtering: read1: quality
Value of each position will be shown on mouse over.
After filtering: read1: base contents
Value of each position will be shown on mouse over.
After filtering: read1: KMER counting
Darker background means larger counts. The count will be shown on mouse over.

| AA | AT | AC | AG | TA | TT | TC | TG | CA | CT | CC | CG | GA | GT | GC | GG
AAA | AAAAA | AAAAT | AAAAC | AAAAG | AAATA | AAATT | AAATC | AAATG | AAACA | AAACT | AAACC | AAACG | AAAGA | AAAGT | AAAGC | AAAGG
AAT | AATAA | AATAT | AATAC | AATAG | AATTA | AATTT | AATTC | AATTG | AATCA | AATCT | AATCC | AATCG | AATGA | AATGT | AATGC | AATGG
AAC | AACAA | AACAT | AACAC | AACAG | AACTA | AACTT | AACTC | AACTG | AACCA | AACCT | AACCC | AACCG | AACGA | AACGT | AACGC | AACGG
AAG | AAGAA | AAGAT | AAGAC | AAGAG | AAGTA | AAGTT | AAGTC | AAGTG | AAGCA | AAGCT | AAGCC | AAGCG | AAGGA | AAGGT | AAGGC | AAGGG
ATA | ATAAA | ATAAT | ATAAC | ATAAG | ATATA | ATATT | ATATC | ATATG | ATACA | ATACT | ATACC | ATACG | ATAGA | ATAGT | ATAGC | ATAGG
ATT | ATTAA | ATTAT | ATTAC | ATTAG | ATTTA | ATTTT | ATTTC | ATTTG | ATTCA | ATTCT | ATTCC | ATTCG | ATTGA | ATTGT | ATTGC | ATTGG
ATC | ATCAA | ATCAT | ATCAC | ATCAG | ATCTA | ATCTT | ATCTC | ATCTG | ATCCA | ATCCT | ATCCC | ATCCG | ATCGA | ATCGT | ATCGC | ATCGG
ATG | ATGAA | ATGAT | ATGAC | ATGAG | ATGTA | ATGTT | ATGTC | ATGTG | ATGCA | ATGCT | ATGCC | ATGCG | ATGGA | ATGGT | ATGGC | ATGGG
ACA | ACAAA | ACAAT | ACAAC | ACAAG | ACATA | ACATT | ACATC | ACATG | ACACA | ACACT | ACACC | ACACG | ACAGA | ACAGT | ACAGC | ACAGG
ACT | ACTAA | ACTAT | ACTAC | ACTAG | ACTTA | ACTTT | ACTTC | ACTTG | ACTCA | ACTCT | ACTCC | ACTCG | ACTGA | ACTGT | ACTGC | ACTGG
ACC | ACCAA | ACCAT | ACCAC | ACCAG | ACCTA | ACCTT | ACCTC | ACCTG | ACCCA | ACCCT | ACCCC | ACCCG | ACCGA | ACCGT | ACCGC | ACCGG
ACG | ACGAA | ACGAT | ACGAC | ACGAG | ACGTA | ACGTT | ACGTC | ACGTG | ACGCA | ACGCT | ACGCC | ACGCG | ACGGA | ACGGT | ACGGC | ACGGG
AGA | AGAAA | AGAAT | AGAAC | AGAAG | AGATA | AGATT | AGATC | AGATG | AGACA | AGACT | AGACC | AGACG | AGAGA | AGAGT | AGAGC | AGAGG
AGT | AGTAA | AGTAT | AGTAC | AGTAG | AGTTA | AGTTT | AGTTC | AGTTG | AGTCA | AGTCT | AGTCC | AGTCG | AGTGA | AGTGT | AGTGC | AGTGG
AGC | AGCAA | AGCAT | AGCAC | AGCAG | AGCTA | AGCTT | AGCTC | AGCTG | AGCCA | AGCCT | AGCCC | AGCCG | AGCGA | AGCGT | AGCGC | AGCGG
AGG | AGGAA | AGGAT | AGGAC | AGGAG | AGGTA | AGGTT | AGGTC | AGGTG | AGGCA | AGGCT | AGGCC | AGGCG | AGGGA | AGGGT | AGGGC | AGGGG
TAA | TAAAA | TAAAT | TAAAC | TAAAG | TAATA | TAATT | TAATC | TAATG | TAACA | TAACT | TAACC | TAACG | TAAGA | TAAGT | TAAGC | TAAGG
TAT | TATAA | TATAT | TATAC | TATAG | TATTA | TATTT | TATTC | TATTG | TATCA | TATCT | TATCC | TATCG | TATGA | TATGT | TATGC | TATGG
TAC | TACAA | TACAT | TACAC | TACAG | TACTA | TACTT | TACTC | TACTG | TACCA | TACCT | TACCC | TACCG | TACGA | TACGT | TACGC | TACGG
TAG | TAGAA | TAGAT | TAGAC | TAGAG | TAGTA | TAGTT | TAGTC | TAGTG | TAGCA | TAGCT | TAGCC | TAGCG | TAGGA | TAGGT | TAGGC | TAGGG
TTA | TTAAA | TTAAT | TTAAC | TTAAG | TTATA | TTATT | TTATC | TTATG | TTACA | TTACT | TTACC | TTACG | TTAGA | TTAGT | TTAGC | TTAGG
TTT | TTTAA | TTTAT | TTTAC | TTTAG | TTTTA | TTTTT | TTTTC | TTTTG | TTTCA | TTTCT | TTTCC | TTTCG | TTTGA | TTTGT | TTTGC | TTTGG
TTC | TTCAA | TTCAT | TTCAC | TTCAG | TTCTA | TTCTT | TTCTC | TTCTG | TTCCA | TTCCT | TTCCC | TTCCG | TTCGA | TTCGT | TTCGC | TTCGG
TTG | TTGAA | TTGAT | TTGAC | TTGAG | TTGTA | TTGTT | TTGTC | TTGTG | TTGCA | TTGCT | TTGCC | TTGCG | TTGGA | TTGGT | TTGGC | TTGGG
TCA | TCAAA | TCAAT | TCAAC | TCAAG | TCATA | TCATT | TCATC | TCATG | TCACA | TCACT | TCACC | TCACG | TCAGA | TCAGT | TCAGC | TCAGG
TCT | TCTAA | TCTAT | TCTAC | TCTAG | TCTTA | TCTTT | TCTTC | TCTTG | TCTCA | TCTCT | TCTCC | TCTCG | TCTGA | TCTGT | TCTGC | TCTGG
TCC | TCCAA | TCCAT | TCCAC | TCCAG | TCCTA | TCCTT | TCCTC | TCCTG | TCCCA | TCCCT | TCCCC | TCCCG | TCCGA | TCCGT | TCCGC | TCCGG
TCG | TCGAA | TCGAT | TCGAC | TCGAG | TCGTA | TCGTT | TCGTC | TCGTG | TCGCA | TCGCT | TCGCC | TCGCG | TCGGA | TCGGT | TCGGC | TCGGG
TGA | TGAAA | TGAAT | TGAAC | TGAAG | TGATA | TGATT | TGATC | TGATG | TGACA | TGACT | TGACC | TGACG | TGAGA | TGAGT | TGAGC | TGAGG
TGT | TGTAA | TGTAT | TGTAC | TGTAG | TGTTA | TGTTT | TGTTC | TGTTG | TGTCA | TGTCT | TGTCC | TGTCG | TGTGA | TGTGT | TGTGC | TGTGG
TGC | TGCAA | TGCAT | TGCAC | TGCAG | TGCTA | TGCTT | TGCTC | TGCTG | TGCCA | TGCCT | TGCCC | TGCCG | TGCGA | TGCGT | TGCGC | TGCGG
TGG | TGGAA | TGGAT | TGGAC | TGGAG | TGGTA | TGGTT | TGGTC | TGGTG | TGGCA | TGGCT | TGGCC | TGGCG | TGGGA | TGGGT | TGGGC | TGGGG
CAA | CAAAA | CAAAT | CAAAC | CAAAG | CAATA | CAATT | CAATC | CAATG | CAACA | CAACT | CAACC | CAACG | CAAGA | CAAGT | CAAGC | CAAGG
CAT | CATAA | CATAT | CATAC | CATAG | CATTA | CATTT | CATTC | CATTG | CATCA | CATCT | CATCC | CATCG | CATGA | CATGT | CATGC | CATGG
CAC | CACAA | CACAT | CACAC | CACAG | CACTA | CACTT | CACTC | CACTG | CACCA | CACCT | CACCC | CACCG | CACGA | CACGT | CACGC | CACGG
CAG | CAGAA | CAGAT | CAGAC | CAGAG | CAGTA | CAGTT | CAGTC | CAGTG | CAGCA | CAGCT | CAGCC | CAGCG | CAGGA | CAGGT | CAGGC | CAGGG
CTA | CTAAA | CTAAT | CTAAC | CTAAG | CTATA | CTATT | CTATC | CTATG | CTACA | CTACT | CTACC | CTACG | CTAGA | CTAGT | CTAGC | CTAGG
CTT | CTTAA | CTTAT | CTTAC | CTTAG | CTTTA | CTTTT | CTTTC | CTTTG | CTTCA | CTTCT | CTTCC | CTTCG | CTTGA | CTTGT | CTTGC | CTTGG
CTC | CTCAA | CTCAT | CTCAC | CTCAG | CTCTA | CTCTT | CTCTC | CTCTG | CTCCA | CTCCT | CTCCC | CTCCG | CTCGA | CTCGT | CTCGC | CTCGG
CTG | CTGAA | CTGAT | CTGAC | CTGAG | CTGTA | CTGTT | CTGTC | CTGTG | CTGCA | CTGCT | CTGCC | CTGCG | CTGGA | CTGGT | CTGGC | CTGGG
CCA | CCAAA | CCAAT | CCAAC | CCAAG | CCATA | CCATT | CCATC | CCATG | CCACA | CCACT | CCACC | CCACG | CCAGA | CCAGT | CCAGC | CCAGG
CCT | CCTAA | CCTAT | CCTAC | CCTAG | CCTTA | CCTTT | CCTTC | CCTTG | CCTCA | CCTCT | CCTCC | CCTCG | CCTGA | CCTGT | CCTGC | CCTGG
CCC | CCCAA | CCCAT | CCCAC | CCCAG | CCCTA | CCCTT | CCCTC | CCCTG | CCCCA | CCCCT | CCCCC | CCCCG | CCCGA | CCCGT | CCCGC | CCCGG
CCG | CCGAA | CCGAT | CCGAC | CCGAG | CCGTA | CCGTT | CCGTC | CCGTG | CCGCA | CCGCT | CCGCC | CCGCG | CCGGA | CCGGT | CCGGC | CCGGG
CGA | CGAAA | CGAAT | CGAAC | CGAAG | CGATA | CGATT | CGATC | CGATG | CGACA | CGACT | CGACC | CGACG | CGAGA | CGAGT | CGAGC | CGAGG
CGT | CGTAA | CGTAT | CGTAC | CGTAG | CGTTA | CGTTT | CGTTC | CGTTG | CGTCA | CGTCT | CGTCC | CGTCG | CGTGA | CGTGT | CGTGC | CGTGG
CGC | CGCAA | CGCAT | CGCAC | CGCAG | CGCTA | CGCTT | CGCTC | CGCTG | CGCCA | CGCCT | CGCCC | CGCCG | CGCGA | CGCGT | CGCGC | CGCGG
CGG | CGGAA | CGGAT | CGGAC | CGGAG | CGGTA | CGGTT | CGGTC | CGGTG | CGGCA | CGGCT | CGGCC | CGGCG | CGGGA | CGGGT | CGGGC | CGGGG
GAA | GAAAA | GAAAT | GAAAC | GAAAG | GAATA | GAATT | GAATC | GAATG | GAACA | GAACT | GAACC | GAACG | GAAGA | GAAGT | GAAGC | GAAGG
GAT | GATAA | GATAT | GATAC | GATAG | GATTA | GATTT | GATTC | GATTG | GATCA | GATCT | GATCC | GATCG | GATGA | GATGT | GATGC | GATGG
GAC | GACAA | GACAT | GACAC | GACAG | GACTA | GACTT | GACTC | GACTG | GACCA | GACCT | GACCC | GACCG | GACGA | GACGT | GACGC | GACGG
GAG | GAGAA | GAGAT | GAGAC | GAGAG | GAGTA | GAGTT | GAGTC | GAGTG | GAGCA | GAGCT | GAGCC | GAGCG | GAGGA | GAGGT | GAGGC | GAGGG
GTA | GTAAA | GTAAT | GTAAC | GTAAG | GTATA | GTATT | GTATC | GTATG | GTACA | GTACT | GTACC | GTACG | GTAGA | GTAGT | GTAGC | GTAGG
GTT | GTTAA | GTTAT | GTTAC | GTTAG | GTTTA | GTTTT | GTTTC | GTTTG | GTTCA | GTTCT | GTTCC | GTTCG | GTTGA | GTTGT | GTTGC | GTTGG
GTC | GTCAA | GTCAT | GTCAC | GTCAG | GTCTA | GTCTT | GTCTC | GTCTG | GTCCA | GTCCT | GTCCC | GTCCG | GTCGA | GTCGT | GTCGC | GTCGG
GTG | GTGAA | GTGAT | GTGAC | GTGAG | GTGTA | GTGTT | GTGTC | GTGTG | GTGCA | GTGCT | GTGCC | GTGCG | GTGGA | GTGGT | GTGGC | GTGGG
GCA | GCAAA | GCAAT | GCAAC | GCAAG | GCATA | GCATT | GCATC | GCATG | GCACA | GCACT | GCACC | GCACG | GCAGA | GCAGT | GCAGC | GCAGG
GCT | GCTAA | GCTAT | GCTAC | GCTAG | GCTTA | GCTTT | GCTTC | GCTTG | GCTCA | GCTCT | GCTCC | GCTCG | GCTGA | GCTGT | GCTGC | GCTGG
GCC | GCCAA | GCCAT | GCCAC | GCCAG | GCCTA | GCCTT | GCCTC | GCCTG | GCCCA | GCCCT | GCCCC | GCCCG | GCCGA | GCCGT | GCCGC | GCCGG
GCG | GCGAA | GCGAT | GCGAC | GCGAG | GCGTA | GCGTT | GCGTC | GCGTG | GCGCA | GCGCT | GCGCC | GCGCG | GCGGA | GCGGT | GCGGC | GCGGG
GGA | GGAAA | GGAAT | GGAAC | GGAAG | GGATA | GGATT | GGATC | GGATG | GGACA | GGACT | GGACC | GGACG | GGAGA | GGAGT | GGAGC | GGAGG
GGT | GGTAA | GGTAT | GGTAC | GGTAG | GGTTA | GGTTT | GGTTC | GGTTG | GGTCA | GGTCT | GGTCC | GGTCG | GGTGA | GGTGT | GGTGC | GGTGG
GGC | GGCAA | GGCAT | GGCAC | GGCAG | GGCTA | GGCTT | GGCTC | GGCTG | GGCCA | GGCCT | GGCCC | GGCCG | GGCGA | GGCGT | GGCGC | GGCGG
GGG | GGGAA | GGGAT | GGGAC | GGGAG | GGGTA | GGGTT | GGGTC | GGGTG | GGGCA | GGGCT | GGGCC | GGGCG | GGGGA | GGGGT | GGGGC | GGGGG

After filtering: read2: quality
Value of each position will be shown on mouse over.
After filtering: read2: base contents
Value of each position will be shown on mouse over.
After filtering: read2: KMER counting
Darker background means larger counts. The count will be shown on mouse over.

| AA | AT | AC | AG | TA | TT | TC | TG | CA | CT | CC | CG | GA | GT | GC | GG
AAA | AAAAA | AAAAT | AAAAC | AAAAG | AAATA | AAATT | AAATC | AAATG | AAACA | AAACT | AAACC | AAACG | AAAGA | AAAGT | AAAGC | AAAGG
AAT | AATAA | AATAT | AATAC | AATAG | AATTA | AATTT | AATTC | AATTG | AATCA | AATCT | AATCC | AATCG | AATGA | AATGT | AATGC | AATGG
AAC | AACAA | AACAT | AACAC | AACAG | AACTA | AACTT | AACTC | AACTG | AACCA | AACCT | AACCC | AACCG | AACGA | AACGT | AACGC | AACGG
AAG | AAGAA | AAGAT | AAGAC | AAGAG | AAGTA | AAGTT | AAGTC | AAGTG | AAGCA | AAGCT | AAGCC | AAGCG | AAGGA | AAGGT | AAGGC | AAGGG
ATA | ATAAA | ATAAT | ATAAC | ATAAG | ATATA | ATATT | ATATC | ATATG | ATACA | ATACT | ATACC | ATACG | ATAGA | ATAGT | ATAGC | ATAGG
ATT | ATTAA | ATTAT | ATTAC | ATTAG | ATTTA | ATTTT | ATTTC | ATTTG | ATTCA | ATTCT | ATTCC | ATTCG | ATTGA | ATTGT | ATTGC | ATTGG
ATC | ATCAA | ATCAT | ATCAC | ATCAG | ATCTA | ATCTT | ATCTC | ATCTG | ATCCA | ATCCT | ATCCC | ATCCG | ATCGA | ATCGT | ATCGC | ATCGG
ATG | ATGAA | ATGAT | ATGAC | ATGAG | ATGTA | ATGTT | ATGTC | ATGTG | ATGCA | ATGCT | ATGCC | ATGCG | ATGGA | ATGGT | ATGGC | ATGGG
ACA | ACAAA | ACAAT | ACAAC | ACAAG | ACATA | ACATT | ACATC | ACATG | ACACA | ACACT | ACACC | ACACG | ACAGA | ACAGT | ACAGC | ACAGG
ACT | ACTAA | ACTAT | ACTAC | ACTAG | ACTTA | ACTTT | ACTTC | ACTTG | ACTCA | ACTCT | ACTCC | ACTCG | ACTGA | ACTGT | ACTGC | ACTGG
ACC | ACCAA | ACCAT | ACCAC | ACCAG | ACCTA | ACCTT | ACCTC | ACCTG | ACCCA | ACCCT | ACCCC | ACCCG | ACCGA | ACCGT | ACCGC | ACCGG
ACG | ACGAA | ACGAT | ACGAC | ACGAG | ACGTA | ACGTT | ACGTC | ACGTG | ACGCA | ACGCT | ACGCC | ACGCG | ACGGA | ACGGT | ACGGC | ACGGG
AGA | AGAAA | AGAAT | AGAAC | AGAAG | AGATA | AGATT | AGATC | AGATG | AGACA | AGACT | AGACC | AGACG | AGAGA | AGAGT | AGAGC | AGAGG
AGT | AGTAA | AGTAT | AGTAC | AGTAG | AGTTA | AGTTT | AGTTC | AGTTG | AGTCA | AGTCT | AGTCC | AGTCG | AGTGA | AGTGT | AGTGC | AGTGG
AGC | AGCAA | AGCAT | AGCAC | AGCAG | AGCTA | AGCTT | AGCTC | AGCTG | AGCCA | AGCCT | AGCCC | AGCCG | AGCGA | AGCGT | AGCGC | AGCGG
AGG | AGGAA | AGGAT | AGGAC | AGGAG | AGGTA | AGGTT | AGGTC | AGGTG | AGGCA | AGGCT | AGGCC | AGGCG | AGGGA | AGGGT | AGGGC | AGGGG
TAA | TAAAA | TAAAT | TAAAC | TAAAG | TAATA | TAATT | TAATC | TAATG | TAACA | TAACT | TAACC | TAACG | TAAGA | TAAGT | TAAGC | TAAGG
TAT | TATAA | TATAT | TATAC | TATAG | TATTA | TATTT | TATTC | TATTG | TATCA | TATCT | TATCC | TATCG | TATGA | TATGT | TATGC | TATGG
TAC | TACAA | TACAT | TACAC | TACAG | TACTA | TACTT | TACTC | TACTG | TACCA | TACCT | TACCC | TACCG | TACGA | TACGT | TACGC | TACGG
TAG | TAGAA | TAGAT | TAGAC | TAGAG | TAGTA | TAGTT | TAGTC | TAGTG | TAGCA | TAGCT | TAGCC | TAGCG | TAGGA | TAGGT | TAGGC | TAGGG
TTA | TTAAA | TTAAT | TTAAC | TTAAG | TTATA | TTATT | TTATC | TTATG | TTACA | TTACT | TTACC | TTACG | TTAGA | TTAGT | TTAGC | TTAGG
TTT | TTTAA | TTTAT | TTTAC | TTTAG | TTTTA | TTTTT | TTTTC | TTTTG | TTTCA | TTTCT | TTTCC | TTTCG | TTTGA | TTTGT | TTTGC | TTTGG
TTC | TTCAA | TTCAT | TTCAC | TTCAG | TTCTA | TTCTT | TTCTC | TTCTG | TTCCA | TTCCT | TTCCC | TTCCG | TTCGA | TTCGT | TTCGC | TTCGG
TTG | TTGAA | TTGAT | TTGAC | TTGAG | TTGTA | TTGTT | TTGTC | TTGTG | TTGCA | TTGCT | TTGCC | TTGCG | TTGGA | TTGGT | TTGGC | TTGGG
TCA | TCAAA | TCAAT | TCAAC | TCAAG | TCATA | TCATT | TCATC | TCATG | TCACA | TCACT | TCACC | TCACG | TCAGA | TCAGT | TCAGC | TCAGG
TCT | TCTAA | TCTAT | TCTAC | TCTAG | TCTTA | TCTTT | TCTTC | TCTTG | TCTCA | TCTCT | TCTCC | TCTCG | TCTGA | TCTGT | TCTGC | TCTGG
TCC | TCCAA | TCCAT | TCCAC | TCCAG | TCCTA | TCCTT | TCCTC | TCCTG | TCCCA | TCCCT | TCCCC | TCCCG | TCCGA | TCCGT | TCCGC | TCCGG
TCG | TCGAA | TCGAT | TCGAC | TCGAG | TCGTA | TCGTT | TCGTC | TCGTG | TCGCA | TCGCT | TCGCC | TCGCG | TCGGA | TCGGT | TCGGC | TCGGG
TGA | TGAAA | TGAAT | TGAAC | TGAAG | TGATA | TGATT | TGATC | TGATG | TGACA | TGACT | TGACC | TGACG | TGAGA | TGAGT | TGAGC | TGAGG
TGT | TGTAA | TGTAT | TGTAC | TGTAG | TGTTA | TGTTT | TGTTC | TGTTG | TGTCA | TGTCT | TGTCC | TGTCG | TGTGA | TGTGT | TGTGC | TGTGG
TGC | TGCAA | TGCAT | TGCAC | TGCAG | TGCTA | TGCTT | TGCTC | TGCTG | TGCCA | TGCCT | TGCCC | TGCCG | TGCGA | TGCGT | TGCGC | TGCGG
TGG | TGGAA | TGGAT | TGGAC | TGGAG | TGGTA | TGGTT | TGGTC | TGGTG | TGGCA | TGGCT | TGGCC | TGGCG | TGGGA | TGGGT | TGGGC | TGGGG
CAA | CAAAA | CAAAT | CAAAC | CAAAG | CAATA | CAATT | CAATC | CAATG | CAACA | CAACT | CAACC | CAACG | CAAGA | CAAGT | CAAGC | CAAGG
CAT | CATAA | CATAT | CATAC | CATAG | CATTA | CATTT | CATTC | CATTG | CATCA | CATCT | CATCC | CATCG | CATGA | CATGT | CATGC | CATGG
CAC | CACAA | CACAT | CACAC | CACAG | CACTA | CACTT | CACTC | CACTG | CACCA | CACCT | CACCC | CACCG | CACGA | CACGT | CACGC | CACGG
CAG | CAGAA | CAGAT | CAGAC | CAGAG | CAGTA | CAGTT | CAGTC | CAGTG | CAGCA | CAGCT | CAGCC | CAGCG | CAGGA | CAGGT | CAGGC | CAGGG
CTA | CTAAA | CTAAT | CTAAC | CTAAG | CTATA | CTATT | CTATC | CTATG | CTACA | CTACT | CTACC | CTACG | CTAGA | CTAGT | CTAGC | CTAGG
CTT | CTTAA | CTTAT | CTTAC | CTTAG | CTTTA | CTTTT | CTTTC | CTTTG | CTTCA | CTTCT | CTTCC | CTTCG | CTTGA | CTTGT | CTTGC | CTTGG
CTC | CTCAA | CTCAT | CTCAC | CTCAG | CTCTA | CTCTT | CTCTC | CTCTG | CTCCA | CTCCT | CTCCC | CTCCG | CTCGA | CTCGT | CTCGC | CTCGG
CTG | CTGAA | CTGAT | CTGAC | CTGAG | CTGTA | CTGTT | CTGTC | CTGTG | CTGCA | CTGCT | CTGCC | CTGCG | CTGGA | CTGGT | CTGGC | CTGGG
CCA | CCAAA | CCAAT | CCAAC | CCAAG | CCATA | CCATT | CCATC | CCATG | CCACA | CCACT | CCACC | CCACG | CCAGA | CCAGT | CCAGC | CCAGG
CCT | CCTAA | CCTAT | CCTAC | CCTAG | CCTTA | CCTTT | CCTTC | CCTTG | CCTCA | CCTCT | CCTCC | CCTCG | CCTGA | CCTGT | CCTGC | CCTGG
CCC | CCCAA | CCCAT | CCCAC | CCCAG | CCCTA | CCCTT | CCCTC | CCCTG | CCCCA | CCCCT | CCCCC | CCCCG | CCCGA | CCCGT | CCCGC | CCCGG
CCG | CCGAA | CCGAT | CCGAC | CCGAG | CCGTA | CCGTT | CCGTC | CCGTG | CCGCA | CCGCT | CCGCC | CCGCG | CCGGA | CCGGT | CCGGC | CCGGG
CGA | CGAAA | CGAAT | CGAAC | CGAAG | CGATA | CGATT | CGATC | CGATG | CGACA | CGACT | CGACC | CGACG | CGAGA | CGAGT | CGAGC | CGAGG
CGT | CGTAA | CGTAT | CGTAC | CGTAG | CGTTA | CGTTT | CGTTC | CGTTG | CGTCA | CGTCT | CGTCC | CGTCG | CGTGA | CGTGT | CGTGC | CGTGG
CGC | CGCAA | CGCAT | CGCAC | CGCAG | CGCTA | CGCTT | CGCTC | CGCTG | CGCCA | CGCCT | CGCCC | CGCCG | CGCGA | CGCGT | CGCGC | CGCGG
CGG | CGGAA | CGGAT | CGGAC | CGGAG | CGGTA | CGGTT | CGGTC | CGGTG | CGGCA | CGGCT | CGGCC | CGGCG | CGGGA | CGGGT | CGGGC | CGGGG
GAA | GAAAA | GAAAT | GAAAC | GAAAG | GAATA | GAATT | GAATC | GAATG | GAACA | GAACT | GAACC | GAACG | GAAGA | GAAGT | GAAGC | GAAGG
GAT | GATAA | GATAT | GATAC | GATAG | GATTA | GATTT | GATTC | GATTG | GATCA | GATCT | GATCC | GATCG | GATGA | GATGT | GATGC | GATGG
GAC | GACAA | GACAT | GACAC | GACAG | GACTA | GACTT | GACTC | GACTG | GACCA | GACCT | GACCC | GACCG | GACGA | GACGT | GACGC | GACGG
GAG | GAGAA | GAGAT | GAGAC | GAGAG | GAGTA | GAGTT | GAGTC | GAGTG | GAGCA | GAGCT | GAGCC | GAGCG | GAGGA | GAGGT | GAGGC | GAGGG
GTA | GTAAA | GTAAT | GTAAC | GTAAG | GTATA | GTATT | GTATC | GTATG | GTACA | GTACT | GTACC | GTACG | GTAGA | GTAGT | GTAGC | GTAGG
GTT | GTTAA | GTTAT | GTTAC | GTTAG | GTTTA | GTTTT | GTTTC | GTTTG | GTTCA | GTTCT | GTTCC | GTTCG | GTTGA | GTTGT | GTTGC | GTTGG
GTC | GTCAA | GTCAT | GTCAC | GTCAG | GTCTA | GTCTT | GTCTC | GTCTG | GTCCA | GTCCT | GTCCC | GTCCG | GTCGA | GTCGT | GTCGC | GTCGG
GTG | GTGAA | GTGAT | GTGAC | GTGAG | GTGTA | GTGTT | GTGTC | GTGTG | GTGCA | GTGCT | GTGCC | GTGCG | GTGGA | GTGGT | GTGGC | GTGGG
GCA | GCAAA | GCAAT | GCAAC | GCAAG | GCATA | GCATT | GCATC | GCATG | GCACA | GCACT | GCACC | GCACG | GCAGA | GCAGT | GCAGC | GCAGG
GCT | GCTAA | GCTAT | GCTAC | GCTAG | GCTTA | GCTTT | GCTTC | GCTTG | GCTCA | GCTCT | GCTCC | GCTCG | GCTGA | GCTGT | GCTGC | GCTGG
GCC | GCCAA | GCCAT | GCCAC | GCCAG | GCCTA | GCCTT | GCCTC | GCCTG | GCCCA | GCCCT | GCCCC | GCCCG | GCCGA | GCCGT | GCCGC | GCCGG
GCG | GCGAA | GCGAT | GCGAC | GCGAG | GCGTA | GCGTT | GCGTC | GCGTG | GCGCA | GCGCT | GCGCC | GCGCG | GCGGA | GCGGT | GCGGC | GCGGG
GGA | GGAAA | GGAAT | GGAAC | GGAAG | GGATA | GGATT | GGATC | GGATG | GGACA | GGACT | GGACC | GGACG | GGAGA | GGAGT | GGAGC | GGAGG
GGT | GGTAA | GGTAT | GGTAC | GGTAG | GGTTA | GGTTT | GGTTC | GGTTG | GGTCA | GGTCT | GGTCC | GGTCG | GGTGA | GGTGT | GGTGC | GGTGG
GGC | GGCAA | GGCAT | GGCAC | GGCAG | GGCTA | GGCTT | GGCTC | GGCTG | GGCCA | GGCCT | GGCCC | GGCCG | GGCGA | GGCGT | GGCGC | GGCGG
GGG | GGGAA | GGGAT | GGGAC | GGGAG | GGGTA | GGGTT | GGGTC | GGGTG | GGGCA | GGGCT | GGGCC | GGGCG | GGGGA | GGGGT | GGGGC | GGGGG